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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
7
ChIP-seq
2
single cell RNA-seq
Assay category
58
Transcription
45
DNA accessibility
7
DNA binding
Target of assay
7
control
Date released
60
February, 2021
35
February, 2023
6
October, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
May, 2019
Available data
102
bam
85
bigWig
74
bed narrowPeak
58
tsv
bigBed narrowPeak
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
110
Homo sapiens
Biosample type
60
cell line
48
tissue
2
primary cell
Organ
762
pancreas
634
connective tissue
473
adipose tissue
361
epithelium
356
liver
293
heart
250
kidney
159
bone element
147
vasculature
145
blood vessel
110
artery
92
brain
55
eye
38
limb
37
embryo
34
musculature of body
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
110
AMP
Genome assembly (visualization)
99
GRCh38
64
hg19
Lab
110
AMP-T2D consortium
files.file_type!
tagAlign
zippedFastqFolder
bigBed narrowPeak
BIOSAMPLE
ASSAY
110 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
tissue
coronary artery
1
36
2
tibial artery
1
1
5
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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