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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
30
DNase-seq
Assay category
49
DNA binding
30
DNA accessibility
Target of assay
49
transcription factor
9
RNA binding protein
histone
8
histone modification
5
chromatin remodeller
4
broad histone mark
4
narrow histone mark
1
other context
1
other post-translational modification
Date released
47
November, 2017
24
June, 2019
4
August, 2017
3
October, 2019
1
November, 2020
Available data
1166
bam
1050
bigWig
825
fastq
524
tsv
502
bed narrowPeak
402
bigBed narrowPeak
153
zippedFastqFolder
79
bed broadPeak
79
bigBed broadPeak
55
bed bed3+
tagAlign
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
79
Homo sapiens
Biosample type
tissue
45
cell line
33
primary cell
1
in vitro differentiated cells
Organ
46
liver
18
epithelium
10
kidney
8
brain
8
vasculature
7
connective tissue
5
blood vessel
3
heart
2
vein
1
eye
1
musculature of body
1
pancreas
Project
79
AMP
Genome assembly (visualization)
72
hg19
65
GRCh38
Lab
79
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
2
inconsistent control read length
files.file_type!
tagAlign
biosample_type!
tissue
target.investigated_as!
histone
BIOSAMPLE
ASSAY
79 results
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ChIP-seq
DNase-seq
cell line
HepG2
44
Panc1
1
primary cell
cardiac fibroblast
3
skeletal muscle myoblast
2
1
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
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in vitro differentiated cells
adipocyte
1
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