Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
DNase-seq
10
ChIP-seq
1
FAIRE-seq
Assay category
29
DNA accessibility
10
DNA binding
Target of assay
5
RNA binding protein
5
histone
5
histone modification
5
transcription factor
3
narrow histone mark
2
broad histone mark
1
chromatin remodeller
Date released
24
June, 2019
6
November, 2017
5
October, 2019
3
August, 2017
1
November, 2020
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
39
Homo sapiens
Biosample type
176
tissue
51
cell line
39
primary cell
1
in vitro differentiated cells
Organ
23
epithelium
13
vasculature
11
brain
10
kidney
9
blood vessel
6
connective tissue
5
vein
3
heart
2
liver
1
eye
1
musculature of body
Project
39
AMP
Genome assembly (visualization)
34
GRCh38
32
hg19
Lab
39
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
39 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
2
2
1
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 18 more…
See all biosamples
Download