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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
57
ChIP-seq
1
whole genome sequencing assay
Assay category
205
DNA accessibility
57
DNA binding
1
DNA sequencing
Target of assay
49
transcription factor
9
RNA binding protein
8
histone
8
histone modification
5
chromatin remodeller
4
broad histone mark
4
narrow histone mark
1
other context
1
other post-translational modification
Date released
187
June, 2019
53
November, 2017
9
November, 2018
9
October, 2019
3
August, 2017
1
August, 2021
1
November, 2020
Available data
3101
bam
2910
bigWig
1685
bed narrowPeak
1469
tsv
1217
fastq
1025
bigBed narrowPeak
tagAlign
321
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
263
Homo sapiens
Biosample type
176
tissue
49
cell line
38
primary cell
in vitro differentiated cells
Organ
78
kidney
53
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
8
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
263
AMP
Genome assembly (visualization)
246
GRCh38
239
hg19
Lab
262
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
2
inconsistent control read length
files.file_type!
tagAlign
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
263 results
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Clear Filters
DNase-seq
ChIP-seq
whole genome sequencing assay
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
cell line
HepG2
47
1
Panc1
1
primary cell
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 18 more…
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