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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
DNase-seq
51
ChIP-seq
1
whole genome sequencing assay
Assay category
195
DNA accessibility
51
DNA binding
1
DNA sequencing
Target of assay
47
transcription factor
7
RNA binding protein
5
chromatin remodeller
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
1
other context
1
other post-translational modification
Date released
180
June, 2019
49
November, 2017
9
November, 2018
4
August, 2017
3
October, 2019
1
August, 2021
1
November, 2020
Available data
3207
bam
3014
bigWig
1684
bed narrowPeak
1532
tsv
1352
fastq
959
bigBed narrowPeak
tagAlign
305
bed broadPeak
268
bigBed broadPeak
260
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
247
Homo sapiens
Biosample type
171
tissue
49
cell line
26
primary cell
1
in vitro differentiated cells
Organ
78
kidney
53
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
vasculature
13
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
247
AMP
Genome assembly (visualization)
232
GRCh38
224
hg19
Lab
246
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
2
inconsistent control read length
files.file_type!
tagAlign
organ_slims!
vasculature
BIOSAMPLE
ASSAY
247 results
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DNase-seq
ChIP-seq
whole genome sequencing assay
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 36 more…
cell line
HepG2
47
1
Panc1
1
primary cell
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
skeletal muscle myoblast
1
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 13 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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