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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
Hi-C
Assay category
10
3D chromatin structure
Date released
4
July, 2019
3
October, 2022
1
March, 2020
1
March, 2023
1
October, 2019
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
10
Homo sapiens
Biosample type
11
tissue
10
primary cell
4
in vitro differentiated cells
3
cell line
Organ
7
epithelium
4
blood vessel
4
vasculature
3
brain
3
pancreas
2
vein
1
connective tissue
1
liver
Project
6
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
9
hg19
1
GRCh38
Lab
6
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
ITG
Audit category:
4
audit script error
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
10 results
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Hi-C
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
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