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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
Hi-C
Assay category
7
3D chromatin structure
Date released
March, 2020
4
October, 2019
2
August, 2021
1
March, 2023
Available data
2693
bam
2536
bigWig
1603
bed narrowPeak
1144
tsv
951
bigBed narrowPeak
887
fastq
tagAlign
301
bed broadPeak
278
bigBed broadPeak
244
bed bed3+
155
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
12
bed bed3
8
csv
7
bed bedgraph
7
hic
5
bedpe bed3+
4
hdf5
4
tar
1
tagAlign bed3+
1
vcf
Organism
7
Homo sapiens
Biosample type
2
in vitro differentiated cells
2
primary cell
2
tissue
1
cell line
Organ
pancreas
5
epithelium
1
blood vessel
1
heart
1
kidney
1
liver
1
vasculature
1
vein
Project
6
AMP
1
ITG
Genome assembly (visualization)
6
hg19
1
GRCh38
Lab
4
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
2
inconsistent ontology term
1
audit script error
files.file_type!
tagAlign
organ_slims!
pancreas
month_released!
March, 2020
BIOSAMPLE
ASSAY
7 results
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Hi-C
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
primary cell
chondrocytes
1
endothelial cell of umbilical vein
1
tissue
heart
1
kidney
1
cell line
HepG2
1
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