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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
42
ATAC-seq
41
WGBS
21
snATAC-seq
Assay category
63
DNA accessibility
52
Transcription
41
DNA methylation
Date released
134
May, 2022
19
September, 2020
3
February, 2023
Available data
310
bigWig
274
bed narrowPeak
205
bam
195
fastq
153
zippedFastqFolder
112
tsv
tagAlign
66
txt
64
xls
7
hic
5
bedpe bed3+
4
bed bed3+
3
bed bedgraph
3
cool
2
bed broadPeak
1
bedpe
1
vcf
Organism
156
Homo sapiens
Biosample type
153
primary cell
3
in vitro differentiated cells
Organ
80
epithelium
80
pancreas
Project
153
HPAP
3
AMP
Genome assembly (visualization)
3
hg19
Lab
153
Klaus Kaestner, Upenn
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
files.file_type!
tagAlign
lab.title!
AMP-T2D consortium
lab.title!!
AMP-T2D consortium
BIOSAMPLE
ASSAY
156 results
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single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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