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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
32
DNase-seq
1
FAIRE-seq
Assay category
43
DNA binding
33
DNA accessibility
Target of assay
40
histone
40
histone modification
22
broad histone mark
18
narrow histone mark
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
25
May, 2019
18
November, 2017
2
November, 2018
1
July, 2019
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
76
Homo sapiens
Biosample type
65
tissue
11
primary cell
Organ
349
liver
104
kidney
94
heart
85
pancreas
84
limb
83
vasculature
79
blood vessel
76
brain
76
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
76
AMP
Genome assembly (visualization)
75
GRCh38
54
hg19
Lab
76
AMP-T2D consortium
files.file_type!
tagAlign
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
76 results
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ChIP-seq
DNase-seq
FAIRE-seq
tissue
brain
14
temporal lobe
13
angular gyrus
12
layer of hippocampus
6
middle frontal area 46
5
+ See 12 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
astrocyte of the hippocampus
1
brain pericyte
1
See all biosamples
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