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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ChIP-seq
32
DNase-seq
17
total RNA-seq
12
single cell RNA-seq
10
snATAC-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
pCHi-C
2
RRBS
1
FAIRE-seq
Assay category
100
DNA binding
47
DNA accessibility
33
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
88
histone
88
histone modification
63
narrow histone mark
25
broad histone mark
12
control
3
RNA binding protein
3
transcription factor
Date released
48
October, 2019
30
June, 2019
28
May, 2019
25
November, 2017
19
April, 2020
18
July, 2019
12
February, 2020
3
March, 2020
2
November, 2018
2
October, 2017
1
February, 2023
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
27
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
187
Homo sapiens
Biosample type
167
tissue
21
primary cell
Organ
927
pancreas
705
liver
662
connective tissue
517
epithelium
483
adipose tissue
387
heart
230
vasculature
224
blood vessel
212
kidney
168
brain
159
bone element
135
artery
122
limb
81
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
169
AMP
19
LungMap
Genome assembly (visualization)
135
GRCh38
121
hg19
Lab
169
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
3
inconsistent ontology term
files.file_type!
tagAlign
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
188 results
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ChIP-seq
DNase-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
small RNA-seq
Hi-C
pCHi-C
RRBS
FAIRE-seq
tissue
brain
6
14
1
1
1
lung
9
10
1
temporal lobe
15
1
1
angular gyrus
13
layer of hippocampus
8
+ See 58 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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