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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
total RNA-seq
70
ChIP-seq
17
pCHi-C
8
snATAC-seq
5
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
103
Transcription
70
DNA binding
13
DNA accessibility
Target of assay
50
histone
50
histone modification
30
broad histone mark
20
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
150
May, 2021
45
May, 2020
8
January, 2021
5
February, 2023
Available data
220
bigWig
180
bam
114
bed narrowPeak
96
tsv
tagAlign
2
bed bed3+
Organism
208
Homo sapiens
Biosample type
155
primary cell
47
in vitro differentiated cells
5
cell line
1
tissue
Organ
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
126
T1D
82
AMP
Genome assembly (visualization)
136
hg19
96
GRCh38
Lab
2892
AMP-T2D consortium
208
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
34
Bing Ren, UCSD
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
ITG
Audit category:
5
inconsistent ontology term
files.file_type!
tagAlign
organ_slims!
pancreas
BIOSAMPLE
ASSAY
208 results
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total RNA-seq
ChIP-seq
pCHi-C
snATAC-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
1
CD8-positive, alpha-beta T cell
4
33
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
in vitro differentiated cells
embryonic stem cell
5
37
5
cell line
EndoC_BH1
3
2
tissue
thymus
1
See all biosamples
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