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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
43
ATAC-seq
18
ChIP-seq
3
Hi-C
3
pCHi-C
3
total RNA-seq
2
RRBS
2
WGBS
Assay category
96
Transcription
43
DNA accessibility
18
DNA binding
4
DNA methylation
3
3D chromatin structure
Target of assay
18
control
Date released
92
August, 2021
36
February, 2023
10
April, 2019
8
February, 2021
6
May, 2019
5
March, 2020
4
July, 2019
3
February, 2020
2
June, 2019
1
October, 2019
Available data
bigWig
211
bam
191
bed narrowPeak
168
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
tagAlign
3
bedpe bed3+
3
hic
Organism
167
Homo sapiens
Biosample type
156
tissue
8
cell line
3
primary cell
Organ
293
pancreas
223
kidney
209
epithelium
167
heart
109
liver
101
bone element
79
vasculature
78
blood vessel
55
eye
54
artery
54
connective tissue
31
limb
28
brain
26
adipose tissue
20
lung
16
skeleton
15
musculature of body
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
167
AMP
Genome assembly (visualization)
43
GRCh38
13
hg19
Lab
167
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
tagAlign
bigWig
month_released!
August, 2017
BIOSAMPLE
ASSAY
167 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
RRBS
WGBS
tissue
coronary artery
35
2
1
heart left ventricle
18
6
1
1
1
2
heart right ventricle
17
2
1
1
right cardiac atrium
18
1
1
left cardiac atrium
18
+ See 10 more…
cell line
smooth muscle cell of the coronary artery
8
primary cell
cardiac fibroblast
2
1
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