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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
322
total RNA-seq
129
ChIP-seq
81
ATAC-seq
11
snATAC-seq
10
MeRIP-seq
8
DNase-seq
6
Hi-C
4
WGBS
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
324
Transcription
129
DNA binding
102
DNA accessibility
6
3D chromatin structure
6
DNA methylation
Target of assay
78
histone
78
histone modification
43
broad histone mark
38
control
35
narrow histone mark
18
transcription factor
9
RNA binding protein
5
nucleotide modification
Date released
131
August, 2017
120
July, 2018
58
May, 2021
55
November, 2019
51
October, 2018
26
February, 2021
24
May, 2022
19
February, 2023
18
October, 2019
14
March, 2020
10
November, 2020
8
January, 2021
7
November, 2018
6
April, 2018
6
July, 2019
6
September, 2017
5
March, 2019
5
October, 2017
4
August, 2021
4
June, 2019
2
May, 2019
1
August, 2022
1
February, 2020
Available data
495
bam
431
bigWig
309
tsv
213
fastq
146
bed narrowPeak
69
bigBed narrowPeak
29
bed bed3+
21
bed broadPeak
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
4
bedpe bed3+
4
hic
1
bedpe
1
hdf5
Organism
580
Homo sapiens
Biosample type
489
tissue
primary cell
92
cell line
Organ
695
liver
623
connective tissue
581
pancreas
481
adipose tissue
374
heart
318
kidney
193
blood vessel
193
vasculature
158
bone element
147
brain
133
artery
122
limb
115
epithelium
67
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
547
AMP
34
T1D
Genome assembly (visualization)
459
hg19
435
GRCh38
Lab
512
AMP-T2D consortium
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
76
inconsistent ontology term
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
files.file_type!
tagAlign
month_released!
August, 2020
biosample_type!
primary cell
BIOSAMPLE
ASSAY
581 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
MeRIP-seq
DNase-seq
Hi-C
WGBS
Capture-C
FAIRE-seq
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
islet of Langerhans
284
41
58
7
4
1
3
1
1
body of pancreas
3
35
4
4
2
2
pancreas
2
9
4
2
1
2
1
1
1
endocrine pancreas
16
cell line
EndoC_BH1
33
15
19
6
1
2
1
Panc1
13
1
1
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