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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
131
ChIP-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
138
Transcription
131
DNA binding
43
DNA accessibility
4
3D chromatin structure
Target of assay
86
histone
86
histone modification
45
transcription factor
43
narrow histone mark
42
broad histone mark
control
11
RNA binding protein
3
chromatin remodeller
Date released
121
May, 2021
48
August, 2017
35
December, 2017
31
February, 2018
26
February, 2021
22
August, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
261
bam
259
bigWig
132
bed narrowPeak
131
tsv
119
fastq
tagAlign
20
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
327
Homo sapiens
Biosample type
2404
tissue
948
primary cell
563
cell line
327
in vitro differentiated cells
9
stem cell
Organ
77
connective tissue
22
embryo
18
epithelium
14
liver
1
adipose tissue
1
heart
Project
327
AMP
Genome assembly (visualization)
275
hg19
242
GRCh38
4
hg18
Lab
278
AMP-T2D consortium
42
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
110
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
files.file_type!
tagAlign
month_released!
August, 2020
target.investigated_as!
control
BIOSAMPLE
ASSAY
327 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
5
47
8
1
1
cardiomyocytes
59
embryonic stem cell
7
34
6
1
cardiac precursors (cardiac muscle cell)
19
1
1
neural progenitor cell
7
1
10
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