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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
349
ChIP-seq
257
ATAC-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1227
Transcription
349
DNA binding
286
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
187
histone modification
186
histone
135
control
123
narrow histone mark
63
broad histone mark
29
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
209
August, 2017
146
October, 2019
143
May, 2020
120
July, 2018
95
February, 2023
75
July, 2019
66
May, 2022
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
29
October, 2018
25
February, 2020
22
May, 2019
19
April, 2020
16
April, 2019
15
May, 2023
12
December, 2017
9
November, 2018
9
October, 2017
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2017
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1907
bam
1772
bigWig
1076
tsv
984
bed narrowPeak
bigBed narrowPeak
377
fastq
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2033
Homo sapiens
Biosample type
2035
tissue
883
primary cell
337
in vitro differentiated cells
296
cell line
10
stem cell
Organ
529
connective tissue
470
adipose tissue
433
pancreas
242
liver
225
heart
212
kidney
158
bone element
82
brain
71
blood vessel
71
vasculature
53
eye
48
artery
38
limb
29
musculature of body
20
lung
17
nerve
16
skeleton
15
epithelium
12
spleen
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1938
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1245
GRCh38
1174
hg19
Lab
1683
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
9
audit script error
Audit category:
22
missing controlled_by
files.file_type!
tagAlign
bigBed narrowPeak
month_released!
August, 2020
BIOSAMPLE
ASSAY
2035 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
298
62
68
7
4
3
1
4
adipose tissue
382
1
2
3
1
liver
167
37
20
1
3
1
1
1
1
kidney
49
9
75
64
6
1
1
bone element
84
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