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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
410
ChIP-seq
208
ATAC-seq
177
DNase-seq
4
FAIRE-seq
Assay category
410
DNA binding
389
DNA accessibility
Target of assay
340
histone modification
339
histone
181
broad histone mark
158
narrow histone mark
70
transcription factor
21
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
June, 2019
111
October, 2019
93
May, 2019
65
April, 2019
64
August, 2021
63
February, 2023
45
October, 2018
40
August, 2017
38
May, 2022
36
December, 2017
20
November, 2019
17
November, 2018
12
November, 2017
8
February, 2021
7
July, 2019
6
January, 2019
6
October, 2017
3
December, 2018
2
March, 2020
Available data
1907
bam
1732
bigWig
1076
tsv
944
bed narrowPeak
561
bigBed narrowPeak
377
fastq
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
799
Homo sapiens
Biosample type
799
tissue
390
cell line
197
primary cell
114
in vitro differentiated cells
2
stem cell
Organ
153
kidney
133
heart
111
pancreas
109
brain
100
blood vessel
100
vasculature
92
limb
86
liver
62
artery
38
musculature of body
30
eye
27
nerve
18
ureter
14
spleen
12
adipose tissue
12
connective tissue
12
epithelium
8
bone element
8
skeleton
Project
797
AMP
2
T1D
Genome assembly (visualization)
727
GRCh38
672
hg19
Lab
697
AMP-T2D consortium
64
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
tagAlign
month_released!
August, 2020
BIOSAMPLE
ASSAY
799 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
kidney
20
64
13
1
liver
55
20
2
islet of Langerhans
14
37
1
1
coronary artery
3
36
2
body of pancreas
26
4
4
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