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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
28
ChIP-seq
2
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
47
DNA accessibility
28
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
7
control
6
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
60
February, 2021
35
February, 2023
26
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
June, 2019
Available data
100
bam
83
bigWig
72
bed narrowPeak
58
tsv
23
bigBed narrowPeak
tagAlign
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
133
Homo sapiens
Biosample type
71
tissue
60
cell line
2
primary cell
Organ
923
pancreas
703
liver
644
connective tissue
497
epithelium
482
adipose tissue
312
heart
273
kidney
223
vasculature
219
blood vessel
159
bone element
138
brain
133
artery
90
limb
69
blood
69
bodily fluid
54
eye
43
nerve
38
musculature of body
37
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
133
AMP
Genome assembly (visualization)
122
GRCh38
87
hg19
Lab
133
AMP-T2D consortium
files.file_type!
tagAlign
month_released!
June, 2019
BIOSAMPLE
ASSAY
133 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
1
36
5
tibial artery
1
1
23
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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