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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
669
ChIP-seq
256
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
small RNA-seq
15
Hi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
669
DNA binding
466
DNA accessibility
DNA methylation
15
3D chromatin structure
Target of assay
442
histone modification
441
histone
227
broad histone mark
214
narrow histone mark
135
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
211
August, 2017
193
October, 2019
163
June, 2019
143
May, 2020
120
July, 2018
115
May, 2019
95
February, 2023
80
April, 2019
74
October, 2018
66
May, 2022
59
July, 2019
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
20
November, 2018
19
April, 2020
16
November, 2017
15
May, 2023
9
October, 2017
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1889
bam
1756
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
363
fastq
tagAlign
212
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
10
bedpe bed3+
10
hic
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2494
Homo sapiens
Biosample type
2496
tissue
930
primary cell
641
cell line
354
in vitro differentiated cells
10
stem cell
Organ
533
connective tissue
478
pancreas
474
adipose tissue
304
heart
298
kidney
286
liver
158
bone element
146
brain
131
blood vessel
131
vasculature
121
limb
73
artery
62
musculature of body
56
eye
43
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2399
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1725
GRCh38
1638
hg19
Lab
2149
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
tagAlign
month_released!
March, 2019
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
2496 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
small RNA-seq
Hi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
298
62
64
1
7
4
2
1
4
adipose tissue
382
2
3
1
liver
167
75
20
2
1
1
1
1
kidney
49
27
75
13
64
6
1
1
bone element
84
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