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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
DNase-seq
47
ChIP-seq
1
ATAC-seq
Assay category
179
DNA accessibility
47
DNA binding
Target of assay
44
transcription factor
4
RNA binding protein
4
chromatin remodeller
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
1
other context
1
other post-translational modification
Date released
163
June, 2019
47
November, 2017
9
November, 2018
5
October, 2019
1
August, 2017
March, 2019
1
October, 2017
Available data
2782
bam
2516
bigWig
1482
bed narrowPeak
1330
tsv
948
fastq
933
bigBed narrowPeak
tagAlign
272
bed broadPeak
236
bed bed3+
236
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
16
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
226
Homo sapiens
Biosample type
177
tissue
48
cell line
primary cell
1
in vitro differentiated cells
Organ
68
kidney
50
liver
36
limb
32
musculature of body
27
brain
27
heart
18
ureter
8
pancreas
5
blood vessel
5
vasculature
4
artery
3
connective tissue
3
eye
2
adipose tissue
2
nerve
1
spleen
Project
226
AMP
Genome assembly (visualization)
214
GRCh38
210
hg19
Lab
225
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
2
inconsistent control read length
files.file_type!
tagAlign
month_released!
March, 2019
biosample_type!
primary cell
BIOSAMPLE
ASSAY
226 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 40 more…
cell line
HepG2
47
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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