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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
45
ChIP-seq
13
ATAC-seq
8
snATAC-seq
1
pCHi-C
Assay category
62
Transcription
45
DNA binding
21
DNA accessibility
Target of assay
39
transcription factor
8
RNA binding protein
8
chromatin remodeller
3
control
1
histone
1
histone modification
1
narrow histone mark
Date released
150
February, 2021
27
December, 2018
18
January, 2019
November, 2018
8
February, 2023
8
January, 2021
1
January, 2018
1
May, 2021
Available data
111
bam
101
bigWig
88
txt
58
tsv
50
bed narrowPeak
45
fastq
42
bigBed narrowPeak
4
bed bed3
Organism
213
Homo sapiens
Biosample type
158
tissue
46
cell line
9
primary cell
Organ
920
pancreas
661
connective tissue
652
liver
517
epithelium
482
adipose tissue
387
heart
354
kidney
230
vasculature
224
blood vessel
166
brain
159
bone element
135
artery
122
limb
81
musculature of body
61
eye
54
blood
54
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
204
AMP
9
T1D
Genome assembly (visualization)
113
hg19
108
GRCh38
Lab
204
AMP-T2D consortium
9
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
inconsistent control
files.file_type!
tagAlign
month_released!
November, 2018
BIOSAMPLE
ASSAY
213 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 9 more…
cell line
GM12878
45
1
primary cell
peripheral blood mononuclear cell
8
megakaryocyte
1
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