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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
14
ChIP-seq
4
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
WGBS
Assay category
34
DNA accessibility
14
DNA binding
6
Transcription
1
DNA methylation
Target of assay
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
Date released
41
June, 2019
6
May, 2019
5
July, 2019
2
March, 2020
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
55
Homo sapiens
Biosample type
44
tissue
11
primary cell
Organ
602
pancreas
568
connective tissue
528
liver
423
adipose tissue
296
epithelium
220
heart
151
vasculature
146
blood vessel
138
brain
131
kidney
91
limb
81
artery
58
bone element
55
musculature of body
43
blood
43
bodily fluid
31
nerve
29
embryo
18
ureter
15
vein
10
spleen
6
eye
1
pericardium
Project
55
AMP
Genome assembly (visualization)
54
hg19
53
GRCh38
Lab
55
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
files.file_type!
tagAlign
month_released!
November, 2018
BIOSAMPLE
ASSAY
55 results
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DNase-seq
ChIP-seq
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
tissue
muscle of leg
13
6
1
muscle of arm
17
skeletal muscle tissue
1
1
1
psoas muscle
2
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
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