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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
16
ATAC-seq
7
total RNA-seq
5
pCHi-C
4
WGBS
2
Capture-C
1
RNA microarray
1
RRBS
Assay category
57
DNA binding
16
DNA accessibility
7
Transcription
5
DNA methylation
Target of assay
32
control
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
Date released
39
August, 2017
18
October, 2018
14
February, 2023
5
February, 2021
3
August, 2021
3
June, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
July, 2019
1
May, 2021
1
May, 2023
1
November, 2019
1
November, 2020
1
October, 2019
Available data
592
bam
bigWig
478
tsv
100
fastq
74
bed narrowPeak
28
bigBed narrowPeak
27
bed bed3+
tagAlign
10
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
92
Homo sapiens
Biosample type
59
tissue
26
in vitro differentiated cells
7
primary cell
1
stem cell
Organ
318
pancreas
223
kidney
221
epithelium
167
heart
125
liver
101
bone element
93
connective tissue
79
vasculature
78
blood vessel
59
adipose tissue
55
eye
54
artery
31
limb
27
brain
26
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
92
AMP
1
T1D
Genome assembly (visualization)
22
hg19
4
GRCh38
Lab
90
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
files.file_type!
tagAlign
bigWig
month_released!
October, 2017
BIOSAMPLE
ASSAY
93 results
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ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
WGBS
Capture-C
RNA microarray
RRBS
tissue
subcutaneous abdominal adipose tissue
28
3
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
adipose tissue
1
1
1
1
1
adipose tissue(adipose white tissue)
1
+ See 1 more…
in vitro differentiated cells
adipocyte
6
5
1
1
chondrocyte
5
immature adipocyte
2
2
preadipocyte
1
1
osteoblast
1
+ See 1 more…
primary cell
cardiac fibroblast
2
1
osteoblast
1
1
adult endothelial progenitor cell
1
mesenchymal stem cell
1
stem cell
mesenchymal stem cell
1
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