Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
147
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
147
DNA binding
138
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
86
histone
86
histone modification
45
transcription factor
43
narrow histone mark
42
broad histone mark
27
control
RNA binding protein
3
chromatin remodeller
Date released
121
May, 2021
50
August, 2017
41
December, 2017
39
February, 2018
26
February, 2021
22
August, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
285
bam
253
bigWig
135
fastq
131
tsv
126
bed narrowPeak
tagAlign
25
bed bed3+
15
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
343
Homo sapiens
Biosample type
2502
tissue
978
primary cell
577
cell line
343
in vitro differentiated cells
10
stem cell
Organ
79
connective tissue
29
embryo
19
epithelium
13
liver
1
adipose tissue
1
heart
Project
343
AMP
Genome assembly (visualization)
274
hg19
241
GRCh38
4
hg18
Lab
294
AMP-T2D consortium
42
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
112
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
files.file_type!
tagAlign
month_released!
October, 2017
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
343 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
49
5
8
1
1
cardiomyocytes
59
embryonic stem cell
35
7
6
1
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
1
+ See 30 more…
See all biosamples
Download