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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
109
single cell RNA-seq
76
ATAC-seq
65
total RNA-seq
6
snATAC-seq
4
Capture-C
3
RNA microarray
3
STARR-seq
2
Hi-C
1
ChIP-seq
Assay category
174
Transcription
82
DNA accessibility
2
3D chromatin structure
1
DNA binding
Target of assay
1
broad histone mark
1
histone
1
histone modification
Date released
704
February, 2021
309
May, 2021
292
August, 2017
264
August, 2021
258
October, 2019
216
June, 2019
205
February, 2023
168
July, 2018
160
May, 2022
147
May, 2020
120
May, 2019
98
July, 2019
80
April, 2019
76
October, 2018
73
September, 2018
61
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
November, 2018
34
December, 2018
31
December, 2017
25
January, 2019
25
November, 2017
24
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
9
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
118
tsv
89
bed narrowPeak
64
xls
57
txt
45
bam
30
bigWig
tagAlign
2
bed bed3+
1
bedpe bed3+
1
hic
Organism
268
Homo sapiens
Biosample type
232
tissue
24
in vitro differentiated cells
13
cell line
Organ
133
kidney
92
heart
liver
8
embryo
8
epithelium
6
blood vessel
6
vasculature
5
connective tissue
4
pancreas
2
artery
1
adipose tissue
Project
269
AMP
Genome assembly (visualization)
89
GRCh38
30
hg19
Lab
132
AMP-T2D consortium
128
Katalin Susztak, Upenn
5
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
5
inconsistent ontology term
4
audit script error
files.file_type!
tagAlign
organ_slims!
liver
BIOSAMPLE
ASSAY
269 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
Capture-C
RNA microarray
STARR-seq
Hi-C
ChIP-seq
tissue
kidney
9
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 13 more…
in vitro differentiated cells
neural progenitor cell
10
7
1
adipocyte
1
1
cardiomyocytes (cardiac muscle cell)
2
osteoblast
1
1
cell line
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
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