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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
360
ChIP-seq
26
total RNA-seq
ATAC-seq
1
single cell RNA-seq
Assay category
360
DNA binding
27
Transcription
Target of assay
244
transcription factor
66
recombinant protein
60
control
53
histone
53
histone modification
37
RNA binding protein
27
narrow histone mark
26
broad histone mark
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
685
February, 2021
328
November, 2017
321
August, 2017
275
May, 2021
243
October, 2019
219
August, 2021
218
June, 2019
191
May, 2020
168
July, 2018
123
May, 2022
120
May, 2019
102
February, 2023
102
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
1
October, 2017
Available data
450
bam
392
bigWig
383
fastq
345
bed narrowPeak
312
bigBed narrowPeak
tagAlign
70
bed broadPeak
64
bigBed broadPeak
26
tsv
3
tar
1
csv
Organism
387
Homo sapiens
Biosample type
303
cell line
68
primary cell
16
tissue
Organ
303
liver
58
pancreas
53
epithelium
25
brain
6
vasculature
3
blood vessel
Project
387
AMP
Genome assembly (visualization)
321
hg19
284
GRCh38
Lab
387
AMP-T2D consortium
Audit category:
42
missing controlled_by
Audit category:
10
inconsistent control read length
4
inconsistent control run_type
files.file_type!
tagAlign
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
387 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
cell line
HepG2
303
primary cell
pancreatic ductal cell
13
4
pancreatic endocrine cell
11
pancreatic acinar cell
8
2
pancreatic alpha cell
10
pancreatic beta cell
10
+ See 4 more…
tissue
layer of hippocampus
8
middle frontal area 46
6
cerebellum (Hemisphere)
2
See all biosamples
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