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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
97
ChIP-seq
31
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
97
DNA binding
36
DNA accessibility
24
Transcription
2
3D chromatin structure
2
DNA methylation
Target of assay
87
histone
87
histone modification
62
narrow histone mark
25
broad histone mark
11
control
2
RNA binding protein
2
transcription factor
Date released
48
October, 2019
29
June, 2019
28
May, 2019
22
November, 2017
17
July, 2019
12
February, 2020
2
March, 2020
2
November, 2018
2
October, 2017
1
February, 2023
Available data
239
bam
217
bigWig
200
bed narrowPeak
124
bigBed narrowPeak
tagAlign
44
bed broadPeak
35
bigBed broadPeak
33
bed bed3+
26
tsv
18
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
163
Homo sapiens
Biosample type
147
tissue
16
primary cell
Organ
927
pancreas
705
liver
662
connective tissue
517
epithelium
483
adipose tissue
354
kidney
347
heart
230
vasculature
blood vessel
168
brain
159
bone element
135
artery
122
limb
81
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
163
AMP
Genome assembly (visualization)
132
GRCh38
116
hg19
Lab
163
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
files.file_type!
tagAlign
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
163 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
6
14
1
1
1
temporal lobe
15
1
1
angular gyrus
13
layer of hippocampus
8
cerebellum (Hemisphere)
2
1
1
1
1
+ See 57 more…
primary cell
astrocyte of the cerebellum
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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