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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
925
total RNA-seq
669
ChIP-seq
184
ATAC-seq
178
DNase-seq
68
single cell RNA-seq
27
WGBS
25
pCHi-C
22
snATAC-seq
16
small RNA-seq
14
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
RNA microarray
Assay category
1009
Transcription
669
DNA binding
388
DNA accessibility
38
DNA methylation
14
3D chromatin structure
Target of assay
442
histone modification
441
histone
227
broad histone mark
214
narrow histone mark
135
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
395
February, 2021
August, 2021
225
August, 2017
193
October, 2019
163
June, 2019
143
May, 2020
120
July, 2018
115
May, 2019
87
February, 2023
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
19
April, 2020
16
November, 2017
15
May, 2023
9
October, 2017
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1841
bam
1714
bigWig
919
tsv
912
bed narrowPeak
561
bigBed narrowPeak
377
fastq
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
25
bed bedMethyl
25
bigBed bedMethyl
12
txt
10
hic
9
bedpe bed3+
6
csv
1
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2151
Homo sapiens
Biosample type
2152
tissue
987
primary cell
598
cell line
332
in vitro differentiated cells
10
stem cell
Organ
538
connective tissue
487
pancreas
479
adipose tissue
291
liver
221
heart
171
kidney
bone element
147
brain
127
blood vessel
127
vasculature
122
limb
71
artery
67
musculature of body
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2055
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1613
GRCh38
1579
hg19
Lab
1930
AMP-T2D consortium
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
14
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
9
audit script error
7
inconsistent ontology term
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
tagAlign
organ_slims!
bone element
month_released!
August, 2021
BIOSAMPLE
ASSAY
2152 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
pCHi-C
snATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
RNA microarray
tissue
islet of Langerhans
297
62
68
1
4
7
2
1
1
4
adipose tissue
382
2
3
3
1
liver
167
75
20
2
1
3
1
1
1
1
kidney
27
11
13
56
1
1
body of pancreas
3
35
4
4
2
2
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