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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
289
total RNA-seq
137
ChIP-seq
62
ATAC-seq
11
snATAC-seq
8
DNase-seq
8
single cell RNA-seq
5
Hi-C
4
MeRIP-seq
4
WGBS
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
299
Transcription
137
DNA binding
83
DNA accessibility
6
DNA methylation
5
3D chromatin structure
Target of assay
89
histone
89
histone modification
48
broad histone mark
41
narrow histone mark
33
control
17
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
143
August, 2017
126
July, 2018
51
October, 2018
39
November, 2019
37
May, 2021
24
May, 2022
18
February, 2023
18
October, 2019
11
September, 2018
9
March, 2020
8
April, 2018
8
January, 2021
7
November, 2018
6
July, 2019
6
September, 2017
5
March, 2019
5
October, 2017
4
June, 2019
4
November, 2020
2
August, 2021
2
May, 2019
1
August, 2022
1
February, 2020
Available data
474
bam
412
bigWig
283
tsv
243
fastq
141
bed narrowPeak
69
bigBed narrowPeak
29
bed bed3+
21
bed broadPeak
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
bedpe bed3+
3
hic
1
bedpe
1
hdf5
Organism
535
Homo sapiens
Biosample type
489
tissue
31
primary cell
15
cell line
Organ
927
pancreas
705
liver
662
connective tissue
epithelium
483
adipose tissue
387
heart
354
kidney
230
vasculature
224
blood vessel
168
brain
159
bone element
artery
122
limb
81
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
505
AMP
30
T1D
Genome assembly (visualization)
440
hg19
419
GRCh38
Lab
472
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
33
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
files.file_type!
tagAlign
organ_slims!
epithelium
artery
BIOSAMPLE
ASSAY
535 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
MeRIP-seq
WGBS
FAIRE-seq
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans
284
41
58
7
1
3
4
1
1
body of pancreas
3
35
4
4
2
2
pancreas
2
9
4
2
1
2
1
1
1
endocrine pancreas
16
primary cell
pancreatic endocrine cell
23
pancreatic stellate cell
4
co-expressing pancreatic endocrine cell
2
unclassified pancreatic endocrine cell
2
cell line
Panc1
13
1
1
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