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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1337
total RNA-seq
1263
ChIP-seq
414
ATAC-seq
297
single cell RNA-seq
130
DNase-seq
85
RNA microarray
78
snATAC-seq
75
WGBS
50
pCHi-C
29
Hi-C
17
RRBS
17
small RNA-seq
10
MeRIP-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
130
DNA accessibility
Date released
109
June, 2019
9
November, 2018
7
October, 2019
4
August, 2017
1
November, 2020
Available data
129
bam
129
bed narrowPeak
129
bigBed narrowPeak
129
bigWig
127
bed broadPeak
127
bigBed broadPeak
126
bed bed3+
11
fastq
Organism
130
Homo sapiens
Biosample type
110
tissue
19
primary cell
1
cell line
in vitro differentiated cells
Organ
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
8
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
130
AMP
Genome assembly (visualization)
127
GRCh38
113
hg19
Lab
130
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
files.file_type!
tagAlign
organ_slims!
kidney
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
130 results
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Clear Filters
DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
muscle of leg
13
body of pancreas
4
+ See 31 more…
primary cell
cardiac fibroblast
3
endothelial cell of umbilical vein
2
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
+ See 10 more…
cell line
Panc1
1
See all biosamples
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