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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
ChIP-seq
56
total RNA-seq
44
ATAC-seq
9
DNase-seq
6
single cell RNA-seq
3
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
93
DNA binding
62
Transcription
54
DNA accessibility
3
3D chromatin structure
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
19
control
4
RNA binding protein
4
transcription factor
Date released
60
February, 2021
50
May, 2019
47
October, 2019
35
February, 2023
July, 2019
6
August, 2021
5
June, 2019
4
March, 2020
3
February, 2020
3
November, 2017
Available data
171
bam
140
bigWig
127
bed narrowPeak
79
bigBed narrowPeak
63
tsv
13
bed broadPeak
13
bigBed broadPeak
9
bed bed3+
tagAlign
3
fastq
3
hic
2
bedpe bed3+
1
tar
Organism
213
Homo sapiens
Biosample type
126
tissue
60
cell line
27
primary cell
Organ
921
pancreas
695
liver
644
connective tissue
504
epithelium
471
adipose tissue
343
kidney
322
heart
218
vasculature
213
blood vessel
159
bone element
150
brain
132
artery
117
limb
71
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
213
AMP
Genome assembly (visualization)
175
GRCh38
146
hg19
Lab
213
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
tagAlign
month_released!
July, 2019
BIOSAMPLE
ASSAY
213 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
coronary artery
5
1
35
2
tibial artery
23
1
1
2
aorta
13
1
4
1
1
ascending aorta
16
1
1
thoracic aorta
16
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
52
8
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
kidney capillary endothelial cell
1
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