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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ChIP-seq
17
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
100
DNA binding
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
88
histone
88
histone modification
63
narrow histone mark
25
broad histone mark
12
control
3
RNA binding protein
3
transcription factor
Date released
47
October, 2019
28
May, 2019
25
November, 2017
16
July, 2019
12
February, 2020
2
March, 2020
1
October, 2017
Available data
208
bam
187
bigWig
170
bed narrowPeak
tagAlign
94
bigBed narrowPeak
26
tsv
18
fastq
15
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
131
Homo sapiens
Biosample type
115
tissue
16
primary cell
Organ
754
pancreas
676
liver
628
connective tissue
475
adipose tissue
394
epithelium
270
heart
191
kidney
172
vasculature
168
blood vessel
147
bone element
131
brain
86
artery
78
limb
60
blood
60
bodily fluid
46
musculature of body
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
131
AMP
Genome assembly (visualization)
101
GRCh38
97
hg19
Lab
131
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
files.file_type!
tagAlign
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
131 results
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ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
temporal lobe
15
1
1
angular gyrus
13
brain
6
1
1
layer of hippocampus
8
middle frontal area 46
6
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primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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