Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
90
ChIP-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
Assay category
90
DNA binding
DNA accessibility
12
Transcription
3
3D chromatin structure
Target of assay
84
histone
84
histone modification
59
narrow histone mark
25
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
45
October, 2019
25
May, 2019
21
November, 2017
14
July, 2019
Available data
208
bam
187
bigWig
170
bed narrowPeak
tagAlign
94
bigBed narrowPeak
26
tsv
18
fastq
15
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
105
Homo sapiens
Biosample type
90
tissue
15
primary cell
Organ
558
pancreas
554
liver
551
connective tissue
418
adipose tissue
244
epithelium
186
heart
136
vasculature
133
blood vessel
105
brain
75
artery
58
bone element
54
blood
54
bodily fluid
53
limb
51
kidney
29
embryo
28
nerve
21
musculature of body
14
spleen
12
vein
2
eye
1
pericardium
Project
105
AMP
Genome assembly (visualization)
99
GRCh38
93
hg19
Lab
105
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
tagAlign
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
105 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
tissue
temporal lobe
13
1
1
angular gyrus
12
brain
5
1
layer of hippocampus
6
middle frontal area 46
5
+ See 40 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
See all biosamples
Download