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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
94
DNA binding
24
Transcription
5
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
85
histone
85
histone modification
60
narrow histone mark
25
broad histone mark
12
control
Date released
48
October, 2019
28
May, 2019
19
November, 2017
18
July, 2019
12
February, 2020
2
March, 2020
2
October, 2017
1
February, 2023
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
tagAlign
47
bed broadPeak
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
130
Homo sapiens
Biosample type
120
tissue
10
primary cell
Organ
920
pancreas
653
connective tissue
653
liver
495
epithelium
481
adipose tissue
317
heart
276
kidney
213
vasculature
211
blood vessel
159
bone element
131
artery
130
brain
86
limb
69
blood
69
bodily fluid
57
eye
48
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
130
AMP
Genome assembly (visualization)
97
GRCh38
93
hg19
Lab
130
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
files.file_type!
tagAlign
bigBed broadPeak
BIOSAMPLE
ASSAY
130 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
temporal lobe
15
1
1
angular gyrus
13
brain
6
1
1
1
layer of hippocampus
8
middle frontal area 46
6
+ See 52 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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