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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
91
DNA binding
37
DNA accessibility
21
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
88
histone
88
histone modification
63
narrow histone mark
25
broad histone mark
control
3
RNA binding protein
3
transcription factor
Date released
48
October, 2019
30
June, 2019
25
May, 2019
20
November, 2017
15
July, 2019
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
1
October, 2017
Available data
216
bigWig
213
bam
203
bed narrowPeak
127
bigBed narrowPeak
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
23
tsv
16
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
156
Homo sapiens
Biosample type
141
tissue
15
primary cell
Organ
877
pancreas
630
connective tissue
625
liver
489
epithelium
460
adipose tissue
342
kidney
329
heart
210
vasculature
205
blood vessel
159
bone element
156
brain
128
artery
105
limb
77
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
156
AMP
Genome assembly (visualization)
132
GRCh38
115
hg19
Lab
156
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
files.file_type!
tagAlign
target.investigated_as!
control
BIOSAMPLE
ASSAY
156 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
5
14
1
1
1
temporal lobe
13
1
1
angular gyrus
12
layer of hippocampus
7
frontal cortex
2
2
1
1
+ See 57 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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