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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
total RNA-seq
122
ChIP-seq
103
ATAC-seq
70
single cell RNA-seq
47
WGBS
19
DNase-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
122
DNA binding
Target of assay
89
histone
89
histone modification
46
narrow histone mark
43
broad histone mark
25
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
26
August, 2017
24
October, 2019
21
September, 2018
19
December, 2017
13
November, 2019
6
June, 2019
6
November, 2017
5
May, 2019
1
March, 2020
1
May, 2021
Available data
129
bam
101
bigWig
97
bed narrowPeak
72
fastq
36
bigBed narrowPeak
tagAlign
6
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
Organism
122
Homo sapiens
Biosample type
88
primary cell
19
in vitro differentiated cells
15
cell line
Organ
466
liver
199
pancreas
131
connective tissue
122
epithelium
100
brain
96
vasculature
93
blood vessel
88
heart
66
limb
65
adipose tissue
60
blood
60
bodily fluid
52
kidney
35
nerve
28
artery
24
musculature of body
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
Project
120
AMP
2
T1D
Genome assembly (visualization)
96
hg19
92
GRCh38
Lab
122
AMP-T2D consortium
Audit category:
25
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
122 results
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Clear Filters
ChIP-seq
primary cell
endothelial cell of umbilical vein
17
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic ductal cell
13
epithelial cell of proximal tubule
10
+ See 5 more…
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
cell line
EndoC_BH1
15
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