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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
126
ChIP-seq
64
ATAC-seq
8
DNase-seq
2
FAIRE-seq
Assay category
126
DNA binding
74
DNA accessibility
Target of assay
114
histone
114
histone modification
60
broad histone mark
54
narrow histone mark
12
transcription factor
8
RNA binding protein
Date released
46
September, 2018
40
October, 2018
37
August, 2017
31
November, 2019
18
May, 2022
7
October, 2019
5
September, 2017
4
June, 2019
4
October, 2017
3
March, 2020
3
November, 2018
1
May, 2019
1
May, 2021
Available data
689
bam
623
bigWig
471
fastq
417
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
200
Homo sapiens
Biosample type
111
tissue
68
primary cell
21
cell line
Organ
402
liver
200
pancreas
183
kidney
147
heart
146
epithelium
129
vasculature
125
blood vessel
120
brain
92
limb
74
connective tissue
70
artery
54
blood
54
bodily fluid
47
musculature of body
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
vein
12
adipose tissue
8
bone element
8
skeleton
Project
196
AMP
4
T1D
Genome assembly (visualization)
198
hg19
180
GRCh38
Lab
182
AMP-T2D consortium
18
Kyle Gaulton, UCSD
Audit category:
14
inconsistent ontology term
Audit category:
33
missing controlled_by
Audit category:
9
inconsistent control read length
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
200 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
14
37
1
1
body of pancreas
26
4
4
endocrine pancreas
14
pancreas
7
2
1
primary cell
pancreatic ductal cell
13
4
pancreatic beta cell
7
7
pancreatic acinar cell
8
5
pancreatic alpha cell
7
6
pancreatic endocrine cell
11
cell line
EndoC_BH1
13
1
Panc1
6
1
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