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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
22
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
49
DNA accessibility
22
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
7
control
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
60
February, 2021
35
February, 2023
22
October, 2019
3
July, 2019
3
May, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
96
bam
79
bigWig
68
bed narrowPeak
58
tsv
19
bigBed narrowPeak
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
129
Homo sapiens
Biosample type
67
tissue
60
cell line
2
primary cell
Organ
861
pancreas
685
liver
636
connective tissue
474
adipose tissue
471
epithelium
339
kidney
322
heart
204
vasculature
199
blood vessel
159
bone element
129
artery
107
limb
105
brain
73
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
129
AMP
Genome assembly (visualization)
118
GRCh38
83
hg19
Lab
129
AMP-T2D consortium
files.file_type!
tagAlign
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
129 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
1
36
3
2
tibial artery
1
1
19
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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