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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ChIP-seq
22
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
1
ATAC-seq
1
FAIRE-seq
Assay category
122
DNA binding
24
DNA accessibility
12
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
116
histone
116
histone modification
91
narrow histone mark
25
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
77
October, 2019
25
May, 2019
20
June, 2019
17
July, 2019
15
November, 2017
6
October, 2017
2
November, 2018
1
February, 2023
Available data
159
bigWig
155
bam
141
bed narrowPeak
65
bigBed narrowPeak
43
tagAlign
37
bed broadPeak
28
bigBed broadPeak
25
bed bed3+
17
fastq
12
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
tagAlign bed3+
Organism
163
Homo sapiens
Biosample type
142
tissue
21
primary cell
Organ
658
pancreas
625
liver
589
connective tissue
426
adipose tissue
311
epithelium
188
heart
165
vasculature
163
brain
159
blood vessel
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
163
AMP
Genome assembly (visualization)
216
GRCh38
163
hg19
Lab
163
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
files.file_type!
tagAlign bed3+
BIOSAMPLE
ASSAY
163 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
ATAC-seq
FAIRE-seq
tissue
brain
11
14
1
1
1
temporal lobe
13
1
1
angular gyrus
14
frontal cortex
2
1
1
1
superior frontal gyrus
4
+ See 65 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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