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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
89
total RNA-seq
13
ATAC-seq
9
WGBS
6
RRBS
5
DNase-seq
1
FAIRE-seq
Assay category
89
Transcription
19
DNA accessibility
15
DNA methylation
Date released
705
February, 2021
291
May, 2020
274
August, 2021
232
May, 2021
201
February, 2023
199
May, 2022
168
July, 2018
115
August, 2017
104
July, 2019
64
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
16
January, 2021
15
February, 2018
15
May, 2023
15
November, 2020
10
December, 2019
9
November, 2018
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
114
fastq
109
bigWig
108
bam
89
tsv
16
bed narrowPeak
10
bigBed narrowPeak
6
bed bedMethyl
6
bigBed bedMethyl
3
bed broadPeak
2
bigBed broadPeak
Organism
123
Homo sapiens
Biosample type
116
tissue
6
primary cell
1
in vitro differentiated cells
Organ
99
pancreas
9
connective tissue
8
adipose tissue
6
liver
4
musculature of body
3
epithelium
1
brain
1
spleen
Project
123
AMP
Genome assembly (visualization)
110
hg19
106
GRCh38
Lab
122
AMP-T2D consortium
1
Stephen Parker, UMich
files.file_type!
tagAlign bed3+
bed bed3+
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
123 results
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total RNA-seq
ATAC-seq
WGBS
RRBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
89
1
1
1
body of pancreas
4
liver
3
1
skeletal muscle tissue
4
adipose tissue
3
+ See 6 more…
primary cell
skeletal muscle myoblast
1
2
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
adipocyte
1
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