Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
123
DNA binding
24
Transcription
4
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
95
histone
95
histone modification
83
narrow histone mark
31
control
12
broad histone mark
Date released
85
October, 2019
28
November, 2017
17
July, 2019
12
February, 2020
10
October, 2017
3
May, 2019
2
March, 2020
1
February, 2023
Available data
243
bam
222
bigWig
203
bed narrowPeak
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
tagAlign bed3+
Organism
158
Homo sapiens
Biosample type
148
tissue
10
primary cell
Organ
855
pancreas
656
connective tissue
481
adipose tissue
448
epithelium
433
liver
299
heart
250
kidney
159
bone element
158
brain
153
vasculature
151
blood vessel
116
artery
55
eye
49
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
158
AMP
Genome assembly (visualization)
98
hg19
90
GRCh38
Lab
158
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
tagAlign bed3+
bigBed narrowPeak
organ_slims!
adrenal gland
BIOSAMPLE
ASSAY
158 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
brain
14
1
1
1
cingulate gyrus
8
layer of hippocampus
7
cerebellum (Hemisphere)
3
1
1
1
substantia nigra
5
1
+ See 72 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
See all biosamples
Download