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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
ChIP-seq
32
DNase-seq
1
FAIRE-seq
Assay category
169
DNA binding
33
DNA accessibility
Target of assay
166
histone
166
histone modification
105
narrow histone mark
61
broad histone mark
3
RNA binding protein
3
transcription factor
Date released
74
October, 2019
64
November, 2017
30
June, 2019
25
May, 2019
6
October, 2017
2
November, 2018
1
July, 2019
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
tagAlign bed3+
Organism
202
Homo sapiens
Biosample type
191
tissue
11
primary cell
Organ
441
liver
214
pancreas
202
brain
183
kidney
151
epithelium
151
heart
133
vasculature
129
blood vessel
92
limb
75
connective tissue
74
artery
60
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
202
AMP
Genome assembly (visualization)
200
GRCh38
140
hg19
Lab
202
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
files.file_type!
tagAlign bed3+
BIOSAMPLE
ASSAY
202 results
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ChIP-seq
DNase-seq
FAIRE-seq
tissue
brain
11
14
layer of hippocampus
17
angular gyrus
14
caudate nucleus
12
1
temporal lobe
13
+ See 67 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
astrocyte of the hippocampus
1
brain pericyte
1
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