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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
single cell RNA-seq
3
Hi-C
Assay category
8
Transcription
3
3D chromatin structure
Date released
6
February, 2021
3
October, 2022
1
November, 2018
1
September, 2018
Available data
3391
bam
3169
bigWig
1817
bed narrowPeak
1600
tsv
1357
fastq
1042
bigBed narrowPeak
398
tagAlign
321
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
tagAlign bed3+
1
vcf
Organism
11
Homo sapiens
Biosample type
6
tissue
5
primary cell
Organ
5
kidney
3
epithelium
3
pancreas
1
liver
Project
8
AMP
3
HPAP
Genome assembly (visualization)
3
hg19
Lab
8
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
8
audit script error
files.file_type!
tagAlign bed3+
lab.title!
Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
11 results
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single cell RNA-seq
Hi-C
tissue
kidney
5
liver
1
primary cell
pancreatic cell
2
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
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