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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
42
ChIP-seq
13
ATAC-seq
8
snATAC-seq
1
pCHi-C
Assay category
62
Transcription
42
DNA binding
21
DNA accessibility
Target of assay
37
transcription factor
4
RNA binding protein
4
chromatin remodeller
3
control
Date released
150
February, 2021
27
December, 2018
January, 2019
15
November, 2018
8
February, 2023
8
January, 2021
1
January, 2018
1
May, 2021
Available data
108
bam
98
bigWig
88
txt
58
tsv
47
bed narrowPeak
42
fastq
39
bigBed narrowPeak
4
bed bed3
Organism
210
Homo sapiens
Biosample type
158
tissue
43
cell line
9
primary cell
Organ
946
pancreas
786
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
285
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
51
blood
51
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
201
AMP
9
T1D
Genome assembly (visualization)
110
hg19
105
GRCh38
Lab
201
AMP-T2D consortium
9
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
inconsistent control
files.file_type!
tagAlign bed3+
month_released!
January, 2019
BIOSAMPLE
ASSAY
210 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 9 more…
cell line
GM12878
42
1
primary cell
peripheral blood mononuclear cell
8
megakaryocyte
1
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