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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
Assay category
49
DNA binding
Target of assay
25
transcription factor
24
histone
24
histone modification
14
broad histone mark
13
chromatin remodeller
10
narrow histone mark
6
RNA binding protein
1
recombinant protein
Date released
21
November, 2017
12
August, 2017
8
December, 2017
5
November, 2018
2
February, 2018
1
October, 2018
Available data
49
bam
49
bigWig
49
fastq
47
bed narrowPeak
31
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
8
bed bed3+
Organism
49
Homo sapiens
Biosample type
26
cell line
16
in vitro differentiated cells
6
tissue
stem cell
1
primary cell
Organ
27
liver
9
pancreas
6
connective tissue
epithelium
3
embryo
Project
49
AMP
Genome assembly (visualization)
49
hg19
45
GRCh38
Lab
49
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
49
inconsistent control read length
9
inconsistent control run_type
4
inconsistent assembly
files.file_type!
tagAlign bed3+
organ_slims!
epithelium
biosample_type!
stem cell
BIOSAMPLE
ASSAY
49 results
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ChIP-seq
cell line
HepG2
26
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
skeletal muscle myoblast
1
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