Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1629
ChIP-seq
1503
total RNA-seq
509
ATAC-seq
363
single cell RNA-seq
184
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
53
pCHi-C
29
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
184
DNA accessibility
Date released
169
June, 2019
October, 2019
9
November, 2018
5
August, 2017
1
November, 2020
Available data
183
bam
183
bed narrowPeak
183
bigBed narrowPeak
183
bigWig
181
bed broadPeak
181
bigBed broadPeak
179
bed bed3+
12
fastq
Organism
184
Homo sapiens
Biosample type
156
tissue
27
primary cell
1
in vitro differentiated cells
Organ
78
kidney
33
musculature of body
32
brain
32
limb
30
heart
ureter
14
epithelium
9
connective tissue
7
pancreas
7
vasculature
6
liver
5
blood vessel
4
eye
2
adipose tissue
2
artery
1
spleen
Project
184
AMP
Genome assembly (visualization)
181
GRCh38
160
hg19
Lab
184
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
files.file_type!
tagAlign bed3+
organ_slims!
ureter
month_released!
October, 2019
BIOSAMPLE
ASSAY
184 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 35 more…
primary cell
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
+ See 17 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
Download