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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
2
ATAC-seq
2
WGBS
1
DNase-seq
1
pCHi-C
Assay category
21
DNA binding
3
DNA accessibility
2
DNA methylation
Target of assay
8
control
7
histone
7
histone modification
6
transcription factor
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
9
November, 2018
7
December, 2018
7
January, 2019
2
October, 2019
1
March, 2020
1
October, 2017
Available data
25
bam
24
fastq
17
bigWig
15
bed narrowPeak
13
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tagAlign
1
tsv
Organism
27
Homo sapiens
Biosample type
27
tissue
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
285
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
27
AMP
Genome assembly (visualization)
17
GRCh38
15
hg19
Lab
27
AMP-T2D consortium
files.file_type!
tagAlign bed3+
organ_slims!
esophagus
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
tissue
spleen
20
1
2
1
1
islet of Langerhans
1
pituitary gland
1
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