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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ChIP-seq
5
total RNA-seq
3
ATAC-seq
3
DNase-seq
2
WGBS
1
pCHi-C
Assay category
56
DNA binding
6
DNA accessibility
5
Transcription
2
DNA methylation
Target of assay
31
histone
31
histone modification
20
broad histone mark
19
control
11
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
44
October, 2019
9
November, 2018
7
December, 2018
7
January, 2019
1
February, 2020
1
March, 2020
1
October, 2017
Available data
67
bam
48
bigWig
42
bed narrowPeak
39
bigBed narrowPeak
24
fastq
6
tsv
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign
Organism
70
Homo sapiens
Biosample type
70
tissue
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
285
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
70
AMP
Genome assembly (visualization)
48
GRCh38
46
hg19
Lab
70
AMP-T2D consortium
files.file_type!
tagAlign bed3+
BIOSAMPLE
ASSAY
70 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
tissue
tibial nerve
35
5
1
2
spleen
20
1
1
2
1
islet of Langerhans
1
pituitary gland
1
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