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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
70
ChIP-seq
Assay category
205
DNA accessibility
70
DNA binding
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
57
November, 2017
12
August, 2017
9
November, 2018
9
October, 2019
1
November, 2020
Available data
3004
bam
2810
bigWig
1586
bed narrowPeak
1469
tsv
1134
fastq
934
bigBed narrowPeak
358
tagAlign
312
bed broadPeak
275
bigBed broadPeak
246
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
3
cool
3
tar
1
bedpe
tagAlign bed3+
1
vcf
Organism
275
Homo sapiens
Biosample type
176
tissue
55
cell line
44
primary cell
in vitro differentiated cells
Organ
78
kidney
59
liver
36
limb
35
brain
33
musculature of body
30
heart
20
epithelium
18
ureter
15
vasculature
12
blood vessel
8
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
275
AMP
Genome assembly (visualization)
259
GRCh38
252
hg19
Lab
275
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
11
inconsistent control read length
1
inconsistent assembly
files.file_type!
tagAlign bed3+
target.investigated_as!
RNA binding protein
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
275 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
cell line
HepG2
54
Panc1
1
primary cell
skeletal muscle myoblast
1
11
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
+ See 18 more…
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