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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
ChIP-seq
129
total RNA-seq
30
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
177
DNA binding
131
Transcription
31
DNA accessibility
4
3D chromatin structure
Target of assay
98
histone
98
histone modification
49
broad histone mark
49
transcription factor
48
narrow histone mark
30
control
11
RNA binding protein
3
chromatin remodeller
Date released
132
May, 2021
68
August, 2017
43
December, 2017
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
254
bam
237
bigWig
141
fastq
124
tsv
107
bed narrowPeak
23
bed bed3+
20
tagAlign
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
352
Homo sapiens
Biosample type
2508
tissue
1083
primary cell
615
cell line
352
in vitro differentiated cells
10
stem cell
Organ
93
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
352
AMP
Genome assembly (visualization)
264
hg19
235
GRCh38
4
hg18
Lab
302
AMP-T2D consortium
47
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
115
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
files.file_type!
tar
month_released!
August, 2021
BIOSAMPLE
ASSAY
352 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
7
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
1
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