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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
200
total RNA-seq
187
single cell RNA-seq
100
ATAC-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
RRBS
4
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
389
Transcription
279
DNA binding
187
DNA accessibility
58
DNA methylation
4
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
32
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
523
bigWig
519
bam
409
fastq
295
bed narrowPeak
225
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
tar
Organism
934
Homo sapiens
Biosample type
2573
tissue
934
primary cell
656
cell line
390
in vitro differentiated cells
10
stem cell
Organ
400
epithelium
343
pancreas
39
connective tissue
36
kidney
34
vasculature
28
blood vessel
21
brain
19
vein
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
454
AMP
321
HPAP
159
T1D
Genome assembly (visualization)
532
hg19
490
GRCh38
Lab
419
AMP-T2D consortium
321
Klaus Kaestner, Upenn
194
Kyle Gaulton, UCSD
Audit category:
46
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
tar
hic
month_released!
May, 2020
BIOSAMPLE
ASSAY
934 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
52
13
1
1
pancreatic alpha cell
13
52
12
35
31
Langerhans cell
85
48
pancreatic beta cell
13
21
12
23
16
exocrine cell
39
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